Maude Pupin

Maître de conférences en Informatique
Univ Lille 1   labo cristal   cnrs inria lne
Bâtiment M3 extension, 59650 Villeneuve d'Ascq
+33 (0)3 28 77 85 55
maude.pupin_at_univ-lille1.fr
on google scholar on researchgate

Postdoc

Ammar Hasan Abdo:
from Yemen has spent one year (Feb 2012-Feb 2013) in Lille to work on activity prediction of nonribosomal peptides.

PhD student

Yoann Dufresne:
PhD thesis in computer science from Lille 1 University started in Oct 2013, supervised with Laurent Noé, Modèles et algorithmes pour la gestion de la biodiversité des peptides non-ribosomiques et la mise en évidence de nouveaux peptides bioactifs
Ségolène Caboche:
PhD thesis in computer science from Lille 1 University (2006-2009), supervised with Valérie Leclère, Philippe Jacques and Grégory Kucherov, Development of a software platform for analysis of nonribosomal peptides (in TEL and in theses.fr)
Aurélien Vanvlassenbroeck
PhD thesis in engineering of biological functions from Lille 1 University (2008-2012), supervised with Valérie Leclère and Philippe Jacques, Experimental and in silico study of the NRPs synthesis in fluorescent Pseudomonas (in theses.fr)
Laurent Debomy:
PhD in computer science from Lille 1 University (2001-2003) not presented for personal reasons, supervised with Jean-Paul Delahaye, Sequence comparison with N-ecriture

Engineer

Juraj Mihalik,
fixed-term bioinformatcis engineer at CNRS working for bilille, has improved the semi-automated process for data update on CRISPRdb ; designed a new version of CRISPRFinder ; developped a viewer and editor for 2D structures of nonribosomal peptides ; designed a semi-automated process to import data from external database to Norine, during 18 months (October 2014-March 2016)
Mohcen Benmounah,
fixed-term bioinformatcis engineer at Lille 1 University, has contributed to correct bug on Norine during 4 monthes in 2013
Louise Ott,
fixed-term bioinformatcis engineer at Lille 1 University, has developped a private database dedicated to nonribosomal peptide synthetases during 6 monthes in 2010
Laurie Tonon
fixed-term software engineer at Inria, has work on Norine interface and change of code's structure during 6 monthes in 2009-2010.

Students in internship research for Master's degree

Yoann Dufresne:
computer science student from Lille (2013), supervised with Laurent Noé, Graphes algorithms for peptide study and inference (webpage in French)
Zorha Saci:
bioinformactics student from Versailles (2010), supervised with Valérie Leclère, Contribution to a software plateform for analysis of nonribosomal peptides
Uciel Pablo Chorostecki:
computer science student from Rosario in Argentina (2010), Bioinformatics annotation of specific enzymes
Estefania Mancini:
biotechnology student from Rosario in Argentina (2009), supervised with Laurent Noé, Ancestral sequence reconstruction with applications to homology search
Cédric Molendi:
computer science student from Lille (2008) supervised with Laurent Noé and Krégory Kucherov, Clustering of repeated regions from one or several DNA sequences.
Ségolène Caboche:
bioinformatics student from Evry (2006) supervised with Valérie Leclère, Database and comparison of nonribosomal peptides
Bertrand Drache:
computer science student from Lille (2005), Mdltiple DNA sequence comparison without alignment
Gwénaël Monot:
computer science student from Lille (2004) supervised with Hélène Touzet, Specific DNA sequences identification for biopuce design
Antony Wojcik:
computer science student from Lille (2003) supervised with Hélène Touzet, Promotors prediction in the human genome
Mickaël Delautre:
computer science student from Lille (2000) supervised with Jean-Stéphane Varré and Jean-Paul Delahaye, DNA sequence alignment and data compression